IL_5IEM_041

3D structure

PDB id

5IEM (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR structure of the 5'-terminal hairpin of the 7SK snRNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AUUG*CU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IEM_041 not in the Motif Atlas

Geometric match to IL_5TBW_101

Geometric discrepancy: 0.269

The information below is about IL_5TBW_101

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_39137.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

5IEM|9|A|A|16
5IEM|9|A|U|17
5IEM|9|A|U|18
5IEM|9|A|G|19
*
5IEM|9|A|C|37
5IEM|9|A|U|38

Current chains

Chain A

7SK snRNA

Nearby chains