IL_5IMQ_023
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGAAAGACC*GGGGGAGC
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMQ_023 not in the Motif Atlas
- Homologous match to IL_6CZR_138
- Geometric discrepancy: 0.2776
- The information below is about IL_6CZR_138
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_57273.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
5IMQ|1|A|G|604
5IMQ|1|A|U|605
5IMQ|1|A|G|606
5IMQ|1|A|A|607
5IMQ|1|A|A|608
5IMQ|1|A|A|609
5IMQ|1|A|G|610
5IMQ|1|A|A|611
5IMQ|1|A|C|612
5IMQ|1|A|C|613
*
5IMQ|1|A|G|627
5IMQ|1|A|G|628
5IMQ|1|A|G|629
5IMQ|1|A|G|630
5IMQ|1|A|G|631
5IMQ|1|A|A|632
5IMQ|1|A|G|633
5IMQ|1|A|C|634
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain H
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S8
- Chain T
- 30S ribosomal protein S16
- Chain U
- 30S ribosomal protein S17
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