IL_5IMQ_044

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMQ_044 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3376

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5IMQ|1|A|C|1259
5IMQ|1|A|C|1260
5IMQ|1|A|A|1261
5IMQ|1|A|C|1262
*
5IMQ|1|A|G|1273
5IMQ|1|A|G|1274
5IMQ|1|A|A|1275
5IMQ|1|A|G|1276

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Y

30S ribosomal protein Thx