IL_5IMQ_048

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCACGC*GCGAAGUC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|A|G|1405
5IMQ|1|A|U|1406
5IMQ|1|A|C|1407
5IMQ|1|A|A|1408
5IMQ|1|A|C|1409
5IMQ|1|A|G|1410
5IMQ|1|A|C|1411
*
5IMQ|1|A|G|1489
5IMQ|1|A|C|1490
5IMQ|1|A|G|1491
5IMQ|1|A|A|1492
5IMQ|1|A|A|1493
5IMQ|1|A|G|1494
5IMQ|1|A|U|1495
5IMQ|1|A|C|1496

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain D

Large subunit ribosomal RNA; LSU rRNA

Chain P

30S ribosomal protein S12