IL_5IMQ_052

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMQ_052 not in the Motif Atlas

Homologous match to IL_4LFB_062

Geometric discrepancy: 0.1709

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

5IMQ|1|A|C|1431
5IMQ|1|A|G|1432
5IMQ|1|A|A|1433
5IMQ|1|A|A|1434
5IMQ|1|A|G|1435
*
5IMQ|1|A|C|1466
5IMQ|1|A|G|1467
5IMQ|1|A|A|1468
5IMQ|1|A|G|1469

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

Large subunit ribosomal RNA; LSU rRNA

Chain X

30S ribosomal protein S20

Chain l

50S ribosomal protein L19