IL_5IMQ_055
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMQ_055 not in the Motif Atlas
- Geometric match to IL_7RQB_001
- Geometric discrepancy: 0.1943
- The information below is about IL_7RQB_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.6
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5IMQ|1|D|G|24
5IMQ|1|D|U|25
5IMQ|1|D|G|26
5IMQ|1|D|G|27
5IMQ|1|D|A|28
5IMQ|1|D|U|29
5IMQ|1|D|G|30
*
5IMQ|1|D|C|510
5IMQ|1|D|U|511
5IMQ|1|D|G|512
5IMQ|1|D|A|513
5IMQ|1|D|A|514
5IMQ|1|D|A|515
5IMQ|1|D|C|516
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain m
- 50S ribosomal protein L20
- Chain o
- 50S ribosomal protein L22
- Chain w
- 50S ribosomal protein L32
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