IL_5IMQ_060
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUGAGUAG*CGAAAGG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMQ_060 not in the Motif Atlas
- Homologous match to IL_4WF9_009
- Geometric discrepancy: 0.1847
- The information below is about IL_4WF9_009
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
5IMQ|1|D|C|238
5IMQ|1|D|U|239
5IMQ|1|D|G|240
5IMQ|1|D|A|241
5IMQ|1|D|G|242
5IMQ|1|D|U|243
5IMQ|1|D|A|244
5IMQ|1|D|G|245
*
5IMQ|1|D|C|253
5IMQ|1|D|G|254
5IMQ|1|D|A|255
5IMQ|1|D|A|256
5IMQ|1|D|A|257
5IMQ|1|D|G|258
5IMQ|1|D|G|259
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain h
- 50S ribosomal protein L15
- Chain z
- 50S ribosomal protein L35
Coloring options: