IL_5IMQ_067
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCU*AUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMQ_067 not in the Motif Atlas
- Homologous match to IL_7A0S_011
- Geometric discrepancy: 0.1982
- The information below is about IL_7A0S_011
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_71625.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 78
Unit IDs
5IMQ|1|D|C|564
5IMQ|1|D|C|565
5IMQ|1|D|U|566
*
5IMQ|1|D|A|575
5IMQ|1|D|U|576
5IMQ|1|D|G|577
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain c
- 50S ribosomal protein L4
- Chain h
- 50S ribosomal protein L15
- Chain m
- 50S ribosomal protein L20
- Chain n
- 50S ribosomal protein L21
- Chain w
- 50S ribosomal protein L32
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