IL_5IMQ_069
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 5IMQ|1|D|G|801, 5IMQ|1|D|G|805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMQ_069 not in the Motif Atlas
- Homologous match to IL_4WF9_021
- Geometric discrepancy: 0.1914
- The information below is about IL_4WF9_021
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
5IMQ|1|D|G|674
5IMQ|1|D|A|675
5IMQ|1|D|A|676
5IMQ|1|D|A|677
5IMQ|1|D|C|678
*
5IMQ|1|D|G|799
5IMQ|1|D|A|800
5IMQ|1|D|G|801
5IMQ|1|D|A|802
5IMQ|1|D|U|803
5IMQ|1|D|A|804
5IMQ|1|D|G|805
5IMQ|1|D|C|806
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain c
- 50S ribosomal protein L4
- Chain h
- 50S ribosomal protein L15
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