IL_5IMQ_072
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGUG*CUC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMQ_072 not in the Motif Atlas
- Homologous match to IL_7RQB_022
- Geometric discrepancy: 0.2924
- The information below is about IL_7RQB_022
- Detailed Annotation
- Major groove platform with extra cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_05564.2
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 14
Unit IDs
5IMQ|1|D|G|738
5IMQ|1|D|G|739
5IMQ|1|D|U|740
5IMQ|1|D|G|741
*
5IMQ|1|D|C|756
5IMQ|1|D|U|757
5IMQ|1|D|C|758
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain y
- 50S ribosomal protein L34
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