IL_5IMQ_080

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

5IMQ|1|D|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMQ_080 not in the Motif Atlas

Homologous match to IL_7A0S_032

Geometric discrepancy: 0.3365

The information below is about IL_7A0S_032

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

5IMQ|1|D|C|994
5IMQ|1|D|C|995
5IMQ|1|D|A|996
*
5IMQ|1|D|U|1159
5IMQ|1|D|G|1160

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L13

Chain m

50S ribosomal protein L20

Chain n

50S ribosomal protein L21

Chain u

50S ribosomal protein L30