IL_5IMQ_094
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMQ_094 not in the Motif Atlas
- Homologous match to IL_5J7L_293
- Geometric discrepancy: 0.2377
- The information below is about IL_5J7L_293
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
5IMQ|1|D|U|1357
5IMQ|1|D|G|1358
5IMQ|1|D|A|1359
5IMQ|1|D|A|1360
5IMQ|1|D|G|1361
*
5IMQ|1|D|C|1370
5IMQ|1|D|G|1371
5IMQ|1|D|U|1372
5IMQ|1|D|A|1373
5IMQ|1|D|G|1374
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain a
- 50S ribosomal protein L2
- Chain v
- 50S ribosomal protein L31
- Chain y
- 50S ribosomal protein L34
Coloring options: