IL_5IMQ_105
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGCGAAC*GGAGGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 5IMQ|1|D|G|1801, 5IMQ|1|D|G|1816, 5IMQ|1|D|U|1820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMQ_105 not in the Motif Atlas
- Homologous match to IL_4WF9_069
- Geometric discrepancy: 0.2638
- The information below is about IL_4WF9_069
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.6
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5IMQ|1|D|U|1798
5IMQ|1|D|G|1799
5IMQ|1|D|C|1800
5IMQ|1|D|G|1801
5IMQ|1|D|A|1802
5IMQ|1|D|A|1803
5IMQ|1|D|C|1804
*
5IMQ|1|D|G|1813
5IMQ|1|D|G|1814
5IMQ|1|D|A|1815
5IMQ|1|D|G|1816
5IMQ|1|D|G|1817
5IMQ|1|D|U|1818
5IMQ|1|D|A|1819
5IMQ|1|D|U|1820
5IMQ|1|D|A|1821
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain a
- 50S ribosomal protein L2
Coloring options: