IL_5IMQ_110
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGGAG*CGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMQ_110 not in the Motif Atlas
- Homologous match to IL_4WF9_074
- Geometric discrepancy: 0.552
- The information below is about IL_4WF9_074
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_66798.3
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
5IMQ|1|D|G|1856
5IMQ|1|D|G|1857
5IMQ|1|D|G|1858
5IMQ|1|D|A|1859
5IMQ|1|D|G|1860
*
5IMQ|1|D|C|1882
5IMQ|1|D|G|1883
5IMQ|1|D|A|1884
5IMQ|1|D|A|1885
5IMQ|1|D|C|1886
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain Z
- 50S ribosomal protein L1
- Chain v
- 50S ribosomal protein L31
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