IL_5IMQ_111

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCGAAAUUCCUUG*CCUGCAC

Length

20 nucleotides

Bulged bases

5IMQ|1|D|A|1938, 5IMQ|1|D|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|D|G|1933
5IMQ|1|D|C|1934
5IMQ|1|D|G|1935
5IMQ|1|D|A|1936
5IMQ|1|D|A|1937
5IMQ|1|D|A|1938
5IMQ|1|D|U|1939
5IMQ|1|D|U|1940
5IMQ|1|D|C|1941
5IMQ|1|D|C|1942
5IMQ|1|D|U|1943
5IMQ|1|D|U|1944
5IMQ|1|D|G|1945
*
5IMQ|1|D|C|1961
5IMQ|1|D|C|1962
5IMQ|1|D|U|1963
5IMQ|1|D|G|1964
5IMQ|1|D|C|1965
5IMQ|1|D|A|1966
5IMQ|1|D|C|1967

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain B

Elongation factor 4