IL_5IMQ_116

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCUGCGUAGGAUAG*CCUGGC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|D|G|2106
5IMQ|1|D|C|2107
5IMQ|1|D|C|2108
5IMQ|1|D|U|2109
5IMQ|1|D|G|2110
5IMQ|1|D|C|2111
5IMQ|1|D|G|2112
5IMQ|1|D|U|2113
5IMQ|1|D|A|2114
5IMQ|1|D|G|2115
5IMQ|1|D|G|2116
5IMQ|1|D|A|2117
5IMQ|1|D|U|2118
5IMQ|1|D|A|2119
5IMQ|1|D|G|2120
*
5IMQ|1|D|C|2178
5IMQ|1|D|C|2179
5IMQ|1|D|U|2180
5IMQ|1|D|G|2181
5IMQ|1|D|G|2182
5IMQ|1|D|C|2183

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain Z

50S ribosomal protein L1