IL_5IMQ_128

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

5IMQ|1|D|G|2576, 5IMQ|1|D|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMQ_128 not in the Motif Atlas

Homologous match to IL_7A0S_089

Geometric discrepancy: 0.275

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

5IMQ|1|D|C|2510
5IMQ|1|D|U|2511
5IMQ|1|D|C|2512
*
5IMQ|1|D|G|2574
5IMQ|1|D|C|2575
5IMQ|1|D|G|2576
5IMQ|1|D|A|2577
5IMQ|1|D|G|2578

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain w

50S ribosomal protein L32