IL_5IMQ_145
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMQ_145 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.1685
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5IMQ|1|E|C|71
5IMQ|1|E|G|72
5IMQ|1|E|A|73
5IMQ|1|E|U|74
5IMQ|1|E|G|75
5IMQ|1|E|G|76
5IMQ|1|E|U|77
5IMQ|1|E|A|78
5IMQ|1|E|C|79
*
5IMQ|1|E|G|97
5IMQ|1|E|G|98
5IMQ|1|E|A|99
5IMQ|1|E|G|100
5IMQ|1|E|A|101
5IMQ|1|E|G|102
5IMQ|1|E|U|103
5IMQ|1|E|A|104
5IMQ|1|E|G|105
Current chains
- Chain E
- 5S ribosomal RNA
Nearby chains
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
- Chain i
- 50S ribosomal protein L16
- Chain r
- 50S ribosomal protein L25
Coloring options: