IL_5IMQ_153

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGG*CCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMQ_153 not in the Motif Atlas

Geometric match to IL_5B2P_002

Geometric discrepancy: 0.2866

The information below is about IL_5B2P_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

5IMQ|1|A|C|656
5IMQ|1|A|G|657
5IMQ|1|A|G|658
*
5IMQ|1|A|C|747
5IMQ|1|A|C|748
5IMQ|1|A|C|749
5IMQ|1|A|G|750

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S8

Chain S

30S ribosomal protein S15