IL_5IMQ_161

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCGGACACCGAAUC*GAUAGGUGA

Length

23 nucleotides

Bulged bases

5IMQ|1|D|A|276, 5IMQ|1|D|C|277, 5IMQ|1|D|G|281, 5IMQ|1|D|A|282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|D|U|273|||E
5IMQ|1|D|C|273|||F
5IMQ|1|D|G|274
5IMQ|1|D|G|275
5IMQ|1|D|A|276
5IMQ|1|D|C|277
5IMQ|1|D|A|278
5IMQ|1|D|C|279
5IMQ|1|D|C|280
5IMQ|1|D|G|281
5IMQ|1|D|A|282
5IMQ|1|D|A|283
5IMQ|1|D|U|284
5IMQ|1|D|C|285
*
5IMQ|1|D|G|356
5IMQ|1|D|A|357
5IMQ|1|D|U|358
5IMQ|1|D|A|359
5IMQ|1|D|G|360
5IMQ|1|D|G|361
5IMQ|1|D|U|362
5IMQ|1|D|G|363
5IMQ|1|D|A|363|||A

Current chains

Chain D

23S ribosomal RNA

Nearby chains