IL_5IMQ_166
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UAAGUGGUAAAGGAUG*CGCCGAAAAUGAUGCGGGGCUUAA
- Length
- 40 nucleotides
- Bulged bases
- 5IMQ|1|D|G|1024, 5IMQ|1|D|U|1026, 5IMQ|1|D|U|1033, 5IMQ|1|D|A|1127, 5IMQ|1|D|U|1130, 5IMQ|1|D|U|1141, 5IMQ|1|D|U|1142, 5IMQ|1|D|A|1142|||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5IMQ|1|D|U|1019
5IMQ|1|D|A|1020
5IMQ|1|D|A|1021
5IMQ|1|D|G|1022
5IMQ|1|D|U|1023
5IMQ|1|D|G|1024
5IMQ|1|D|G|1025
5IMQ|1|D|U|1026
5IMQ|1|D|A|1027
5IMQ|1|D|A|1028
5IMQ|1|D|A|1029
5IMQ|1|D|G|1030
5IMQ|1|D|G|1031
5IMQ|1|D|A|1032
5IMQ|1|D|U|1033
5IMQ|1|D|G|1034
*
5IMQ|1|D|C|1121
5IMQ|1|D|G|1122
5IMQ|1|D|C|1123
5IMQ|1|D|C|1124
5IMQ|1|D|G|1125
5IMQ|1|D|A|1126
5IMQ|1|D|A|1127
5IMQ|1|D|A|1128
5IMQ|1|D|A|1129
5IMQ|1|D|U|1130
5IMQ|1|D|G|1131
5IMQ|1|D|A|1132
5IMQ|1|D|U|1133
5IMQ|1|D|G|1134
5IMQ|1|D|C|1135
5IMQ|1|D|G|1136
5IMQ|1|D|G|1137
5IMQ|1|D|G|1138
5IMQ|1|D|G|1139
5IMQ|1|D|C|1140
5IMQ|1|D|U|1141
5IMQ|1|D|U|1142
5IMQ|1|D|A|1142|||A
5IMQ|1|D|A|1143
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L36
- Chain E
- 5S ribosomal RNA; 5S rRNA
- Chain b
- 50S ribosomal protein L3
- Chain e
- 50S ribosomal protein L6
- Chain f
- 50S ribosomal protein L13
- Chain i
- 50S ribosomal protein L16
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