IL_5IMQ_167

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCGCGAAGACAGCCA*UGGUCGAGUGG

Length

26 nucleotides

Bulged bases

5IMQ|1|D|G|1044, 5IMQ|1|D|A|1046, 5IMQ|1|D|A|1111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|D|C|1040
5IMQ|1|D|C|1041
5IMQ|1|D|G|1042
5IMQ|1|D|C|1043
5IMQ|1|D|G|1044
5IMQ|1|D|A|1045
5IMQ|1|D|A|1046
5IMQ|1|D|G|1047
5IMQ|1|D|A|1048
5IMQ|1|D|C|1049
5IMQ|1|D|A|1050
5IMQ|1|D|G|1051
5IMQ|1|D|C|1052
5IMQ|1|D|C|1053
5IMQ|1|D|A|1054
*
5IMQ|1|D|U|1105
5IMQ|1|D|G|1106
5IMQ|1|D|G|1107
5IMQ|1|D|U|1108
5IMQ|1|D|C|1109
5IMQ|1|D|G|1110
5IMQ|1|D|A|1111
5IMQ|1|D|G|1112
5IMQ|1|D|U|1113
5IMQ|1|D|G|1114
5IMQ|1|D|G|1115

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L36

Chain 2

50S ribosomal protein L10

Chain e

50S ribosomal protein L6

Chain r

50S ribosomal protein L25