IL_5IMQ_168

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAC*GGC

Length

6 nucleotides

Bulged bases

5IMQ|1|D|A|1220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMQ_168 not in the Motif Atlas

Homologous match to IL_7A0S_044

Geometric discrepancy: 0.4062

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

5IMQ|1|D|G|1219
5IMQ|1|D|A|1220
5IMQ|1|D|C|1221
*
5IMQ|1|D|G|1228
5IMQ|1|D|G|1229
5IMQ|1|D|C|1230

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L20

Chain n

50S ribosomal protein L21