IL_5IMQ_177

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUG*CUAACCCUCGGAUGGGGGGACAGC

Length

28 nucleotides

Bulged bases

5IMQ|1|D|G|2210, 5IMQ|1|D|G|2211, 5IMQ|1|D|A|2212, 5IMQ|1|D|U|2213, 5IMQ|1|D|G|2215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|D|G|2090
5IMQ|1|D|U|2091
5IMQ|1|D|U|2092
5IMQ|1|D|G|2093
*
5IMQ|1|D|C|2196
5IMQ|1|D|U|2197
5IMQ|1|D|A|2198
5IMQ|1|D|A|2199
5IMQ|1|D|C|2205
5IMQ|1|D|C|2206
5IMQ|1|D|C|2207
5IMQ|1|D|U|2208
5IMQ|1|D|C|2209
5IMQ|1|D|G|2210
5IMQ|1|D|G|2211
5IMQ|1|D|A|2212
5IMQ|1|D|U|2213
5IMQ|1|D|G|2215
5IMQ|1|D|G|2216
5IMQ|1|D|G|2217
5IMQ|1|D|G|2218
5IMQ|1|D|G|2219
5IMQ|1|D|G|2224
5IMQ|1|D|A|2225
5IMQ|1|D|C|2226
5IMQ|1|D|A|2227
5IMQ|1|D|G|2228
5IMQ|1|D|C|2229

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2

Chain v

50S ribosomal protein L31