IL_5IMQ_178
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCGAG*CGAGC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMQ_178 not in the Motif Atlas
- Geometric match to IL_7A0S_056
- Geometric discrepancy: 0.2486
- The information below is about IL_7A0S_056
- Detailed Annotation
- Double sheared with near cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
5IMQ|1|D|G|2349
5IMQ|1|D|C|2350
5IMQ|1|D|G|2351
5IMQ|1|D|A|2352
5IMQ|1|D|G|2353
*
5IMQ|1|D|C|2364
5IMQ|1|D|G|2365
5IMQ|1|D|A|2366
5IMQ|1|D|G|2367
5IMQ|1|D|C|2368
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain k
- 50S ribosomal protein L18
- Chain s
- 50S ribosomal protein L27
- Chain x
- 50S ribosomal protein L33
- Chain z
- 50S ribosomal protein L35
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