IL_5IMQ_179

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCUGAUCU*AGGUUUGGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|D|G|2455
5IMQ|1|D|C|2456
5IMQ|1|D|U|2457
5IMQ|1|D|G|2458
5IMQ|1|D|A|2459
5IMQ|1|D|U|2460
5IMQ|1|D|C|2461
5IMQ|1|D|U|2462
*
5IMQ|1|D|A|2488
5IMQ|1|D|G|2489
5IMQ|1|D|G|2490
5IMQ|1|D|U|2491
5IMQ|1|D|U|2492
5IMQ|1|D|U|2493
5IMQ|1|D|G|2494
5IMQ|1|D|G|2495
5IMQ|1|D|C|2496

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain B

Elongation factor 4

Chain E

5S ribosomal RNA; 5S rRNA

Chain i

50S ribosomal protein L16