IL_5IMQ_180

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUCCUAGUAC*GGACCGGAA

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|D|U|2649
5IMQ|1|D|U|2650
5IMQ|1|D|C|2651
5IMQ|1|D|C|2652
5IMQ|1|D|U|2653
5IMQ|1|D|A|2654
5IMQ|1|D|G|2655
5IMQ|1|D|U|2656
5IMQ|1|D|A|2657
5IMQ|1|D|C|2658
*
5IMQ|1|D|G|2663
5IMQ|1|D|G|2664
5IMQ|1|D|A|2665
5IMQ|1|D|C|2666
5IMQ|1|D|C|2667
5IMQ|1|D|G|2668
5IMQ|1|D|G|2669
5IMQ|1|D|A|2670
5IMQ|1|D|A|2671

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain B

Elongation factor 4

Chain b

50S ribosomal protein L3

Chain e

50S ribosomal protein L6

Chain g

50S ribosomal protein L14