IL_5IMQ_181

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUCUGGUUUCC*GGUAGCCAUG

Length

22 nucleotides

Bulged bases

5IMQ|1|D|U|2689, 5IMQ|1|D|C|2690, 5IMQ|1|D|U|2726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|D|C|2680
5IMQ|1|D|C|2681
5IMQ|1|D|U|2682
5IMQ|1|D|C|2683
5IMQ|1|D|U|2684
5IMQ|1|D|G|2685
5IMQ|1|D|G|2686
5IMQ|1|D|U|2687
5IMQ|1|D|U|2688
5IMQ|1|D|U|2689
5IMQ|1|D|C|2690
5IMQ|1|D|C|2691
*
5IMQ|1|D|G|2718
5IMQ|1|D|G|2719
5IMQ|1|D|U|2720
5IMQ|1|D|A|2721
5IMQ|1|D|G|2722
5IMQ|1|D|C|2723
5IMQ|1|D|C|2724
5IMQ|1|D|A|2725
5IMQ|1|D|U|2726
5IMQ|1|D|G|2727

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain g

50S ribosomal protein L14

Chain j

50S ribosomal protein L17

Chain l

50S ribosomal protein L19