IL_5IMQ_188

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

5IMQ|1|A|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMQ_188 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.2698

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

5IMQ|1|A|U|1052
5IMQ|1|A|G|1053
5IMQ|1|A|C|1054
5IMQ|1|A|A|1055
5IMQ|1|A|U|1056
*
5IMQ|1|A|A|1204
5IMQ|1|A|U|1205
5IMQ|1|A|G|1206

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S3

Chain R

30S ribosomal protein S14 type Z