IL_5IMQ_201

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCAGGGUG*CAACAAGCUCUG

Length

21 nucleotides

Bulged bases

5IMQ|1|D|G|1475, 5IMQ|1|D|U|1482, 5IMQ|1|D|A|1508, 5IMQ|1|D|C|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|D|C|1474
5IMQ|1|D|G|1475
5IMQ|1|D|C|1476
5IMQ|1|D|A|1477
5IMQ|1|D|G|1478
5IMQ|1|D|G|1479
5IMQ|1|D|G|1480
5IMQ|1|D|U|1482
5IMQ|1|D|G|1483
*
5IMQ|1|D|C|1506
5IMQ|1|D|A|1507
5IMQ|1|D|A|1508
5IMQ|1|D|C|1509
5IMQ|1|D|A|1510
5IMQ|1|D|A|1511
5IMQ|1|D|G|1512
5IMQ|1|D|C|1513
5IMQ|1|D|U|1514
5IMQ|1|D|C|1515
5IMQ|1|D|U|1516
5IMQ|1|D|G|1517

Current chains

Chain D

23S ribosomal RNA

Nearby chains