IL_5IPN_002
3D structure
- PDB id
- 5IPN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SigmaS-transcription initiation complex with 4-nt nascent RNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4.61 Å
Loop
- Sequence
- GTATG*CATAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5IPN|1|1|DG|30
5IPN|1|1|DT|31
5IPN|1|1|DA|32
5IPN|1|1|DT|33
5IPN|1|1|DG|34
*
5IPN|1|2|DC|29
5IPN|1|2|DA|30
5IPN|1|2|DT|31
5IPN|1|2|DA|32
5IPN|1|2|DC|33
Current chains
- Chain 1
- synthetic non-template strand DNA (50-MER)
- Chain 2
- synthetic template strand DNA (50-MER)
Nearby chains
- Chain D
- DNA-directed RNA polymerase subunit beta'
- Chain F
- RNA polymerase sigma factor RpoS
Coloring options: