IL_5IPN_003

3D structure

PDB id

5IPN (explore in PDB, NAKB, or RNA 3D Hub)

Description

SigmaS-transcription initiation complex with 4-nt nascent RNA

Experimental method

X-RAY DIFFRACTION

Resolution

4.61 Å

Loop

Sequence

CTC*(GTP)AG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IPN|1|2|DC|14
5IPN|1|2|DT|15
5IPN|1|2|DC|16
*
5IPN|1|3|GTP|14
5IPN|1|3|A|15
5IPN|1|3|G|16

Current chains

Chain 2

synthetic template strand DNA (50-MER)

Chain 3

Nascent RNA 4-mer

Nearby chains

Chain C

DNA-directed RNA polymerase subunit beta

Chain D

DNA-directed RNA polymerase subunit beta'

Chain F

RNA polymerase sigma factor RpoS