IL_5IQR_135

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUG*CA

Length

5 nucleotides

Bulged bases

5IQR|1|2|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IQR_135 not in the Motif Atlas

Homologous match to IL_4LFB_014

Geometric discrepancy: 0.2247

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

5IQR|1|2|U|367
5IQR|1|2|U|368
5IQR|1|2|G|369
*
5IQR|1|2|C|392
5IQR|1|2|A|393

Current chains

Chain 2

SSU rRNA

Nearby chains

Chain 8

GTP pyrophosphokinase

Chain u

30S ribosomal protein S16