IL_5IQR_142

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAG,CUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IQR_142 not in the Motif Atlas

Geometric match to IL_4LFB_063

Geometric discrepancy: 0.1669

The information below is about IL_4LFB_063

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

5IQR|1|2|G|455
5IQR|1|2|A|456
5IQR|1|2|G|457
*
5IQR|1|2|C|475
5IQR|1|2|U|476
5IQR|1|2|C|477

Current chains

Chain 2

SSU rRNA

Nearby chains

Chain u

30S ribosomal protein S16