IL_5IQR_178

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IQR_178 not in the Motif Atlas

Geometric match to IL_5J7L_057

Geometric discrepancy: 0.099

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5IQR|1|2|C|1303
5IQR|1|2|G|1304
5IQR|1|2|G|1305
5IQR|1|2|A|1306
5IQR|1|2|U|1307
5IQR|1|2|U|1308
*
5IQR|1|2|A|1329
5IQR|1|2|U|1330
5IQR|1|2|G|1331
5IQR|1|2|A|1332
5IQR|1|2|A|1333
5IQR|1|2|G|1334

Current chains

Chain 2

SSU rRNA

Nearby chains

Chain r

30S ribosomal protein S13