IL_5IT9_029

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGCCC*GGGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IT9|1|2|G|486
5IT9|1|2|G|487
5IT9|1|2|C|488
5IT9|1|2|C|489
5IT9|1|2|C|490
*
5IT9|1|2|G|495
5IT9|1|2|G|496
5IT9|1|2|G|497
5IT9|1|2|U|498
5IT9|1|2|C|499

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain e

Ribosomal protein eS30