IL_5IT9_033

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

5IT9|1|2|U|557

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT9_033 not in the Motif Atlas

Homologous match to IL_4V88_414

Geometric discrepancy: 0.4475

The information below is about IL_4V88_414

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5IT9|1|2|G|556
5IT9|1|2|U|557
5IT9|1|2|C|558
*
5IT9|1|2|G|585
5IT9|1|2|C|586

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Ribosomal protein uS3

Chain X

Ribosomal protein uS21

Chain e

Ribosomal protein eS30