IL_5IT9_040

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCCGGUC*GGUUUUUC

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IT9|1|2|G|650
5IT9|1|2|U|651
5IT9|1|2|C|652
5IT9|1|2|C|653
5IT9|1|2|G|654
5IT9|1|2|G|655
5IT9|1|2|U|656
5IT9|1|2|C|657
*
5IT9|1|2|G|676
5IT9|1|2|G|677
5IT9|1|2|U|678
5IT9|1|2|U|679
5IT9|1|2|U|680
5IT9|1|2|U|681
5IT9|1|2|U|682
5IT9|1|2|C|683

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Ribosomal protein uS4

Chain V

Ribosomal protein eS21