IL_5IT9_045

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

5IT9|1|2|U|958

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT9_045 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1255

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5IT9|1|2|G|866
5IT9|1|2|G|867
5IT9|1|2|A|868
5IT9|1|2|C|869
*
5IT9|1|2|G|956
5IT9|1|2|U|957
5IT9|1|2|U|958
5IT9|1|2|U|959
5IT9|1|2|U|960

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N

Ribosomal protein uS15

Chain b

Ribosomal protein eS27