IL_5IT9_055

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

5IT9|1|2|A|1629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT9_055 not in the Motif Atlas

Homologous match to IL_4V88_441

Geometric discrepancy: 0.1932

The information below is about IL_4V88_441

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

5IT9|1|2|G|1145
5IT9|1|2|A|1146
*
5IT9|1|2|U|1628
5IT9|1|2|A|1629
5IT9|1|2|C|1630

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein uS5

Chain a

Ribosomal protein eS26