IL_5IT9_056
3D structure
- PDB id
- 5IT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGA*UU
- Length
- 5 nucleotides
- Bulged bases
- 5IT9|1|2|G|1149
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IT9_056 not in the Motif Atlas
- Homologous match to IL_4V88_442
- Geometric discrepancy: 0.1775
- The information below is about IL_4V88_442
- Detailed Annotation
- Single bulged G
- Broad Annotation
- No text annotation
- Motif group
- IL_00225.7
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 49
Unit IDs
5IT9|1|2|G|1148
5IT9|1|2|G|1149
5IT9|1|2|A|1150
*
5IT9|1|2|U|1625
5IT9|1|2|U|1626
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain a
- Ribosomal protein eS26
Coloring options: