3D structure

PDB id
5IT9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GGA*UU
Length
5 nucleotides
Bulged bases
5IT9|1|2|G|1149
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5IT9_056 not in the Motif Atlas
Homologous match to IL_4V88_442
Geometric discrepancy: 0.1775
The information below is about IL_4V88_442
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.7
Basepair signature
cWW-L-cWW
Number of instances in this motif group
49

Unit IDs

5IT9|1|2|G|1148
5IT9|1|2|G|1149
5IT9|1|2|A|1150
*
5IT9|1|2|U|1625
5IT9|1|2|U|1626

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain a
Ribosomal protein eS26

Coloring options:


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