IL_5IT9_062

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACA*UU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT9_062 not in the Motif Atlas

Geometric match to IL_4V88_454

Geometric discrepancy: 0.3528

The information below is about IL_4V88_454

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

5IT9|1|2|A|1233
5IT9|1|2|C|1234
5IT9|1|2|A|1235
*
5IT9|1|2|U|1248
5IT9|1|2|U|1249

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

Ribosomal protein uS19

Chain d

Ribosomal protein eS29

Chain f

Ribosomal protein eS31