IL_5IT9_064

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

5IT9|1|2|C|1273

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT9_064 not in the Motif Atlas

Homologous match to IL_4V88_450

Geometric discrepancy: 0.1466

The information below is about IL_4V88_450

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

4

Unit IDs

5IT9|1|2|U|1271
5IT9|1|2|G|1272
5IT9|1|2|C|1273
5IT9|1|2|A|1274
5IT9|1|2|U|1275
*
5IT9|1|2|A|1434
5IT9|1|2|U|1435
5IT9|1|2|G|1436

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Ribosomal protein uS3

Chain K

Ribosomal protein eS10

Chain U

Ribosomal protein uS10

Chain d

Ribosomal protein eS29

Chain i

Cripavirus internal ribosome entry site (IRES); CrPV IRES