IL_5IT9_067

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT9_067 not in the Motif Atlas

Geometric match to IL_5UNE_007

Geometric discrepancy: 0.1923

The information below is about IL_5UNE_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5IT9|1|2|U|1289
5IT9|1|2|G|1290
5IT9|1|2|G|1291
*
5IT9|1|2|C|1322
5IT9|1|2|G|1323
5IT9|1|2|A|1324

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uS2

Chain C

Ribosomal protein uS5

Chain D

Ribosomal protein uS3

Chain R

Ribosomal protein eS17