IL_5IT9_069
3D structure
- PDB id
- 5IT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUAC*GAG
- Length
- 7 nucleotides
- Bulged bases
- 5IT9|1|2|U|1339
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IT9_069 not in the Motif Atlas
- Homologous match to IL_4V88_455
- Geometric discrepancy: 0.1437
- The information below is about IL_4V88_455
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
5IT9|1|2|C|1338
5IT9|1|2|U|1339
5IT9|1|2|A|1340
5IT9|1|2|C|1341
*
5IT9|1|2|G|1381
5IT9|1|2|A|1382
5IT9|1|2|G|1383
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain Q
- Ribosomal protein uS9
- Chain R
- Ribosomal protein eS17
- Chain U
- Ribosomal protein uS10
- Chain g
- Ribosomal protein RACK1
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