IL_5IT9_074
3D structure
- PDB id
- 5IT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IT9_074 not in the Motif Atlas
- Homologous match to IL_8C3A_466
- Geometric discrepancy: 0.128
- The information below is about IL_8C3A_466
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48143.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5IT9|1|2|G|1478
5IT9|1|2|C|1479
5IT9|1|2|C|1480
5IT9|1|2|A|1481
5IT9|1|2|G|1482
5IT9|1|2|C|1483
5IT9|1|2|G|1484
5IT9|1|2|A|1485
*
5IT9|1|2|U|1517
5IT9|1|2|U|1518
5IT9|1|2|G|1519
5IT9|1|2|U|1520
5IT9|1|2|G|1521
5IT9|1|2|A|1522
5IT9|1|2|A|1523
5IT9|1|2|A|1524
5IT9|1|2|C|1525
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D
- Ribosomal protein uS3
- Chain F
- Ribosomal protein uS7
- Chain Q
- Ribosomal protein uS9
- Chain T
- Ribosomal protein eS19
- Chain U
- Ribosomal protein uS10
- Chain d
- Ribosomal protein eS29
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