IL_5IT9_075

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUACAAC*GUAAUC

Length

13 nucleotides

Bulged bases

5IT9|1|2|A|1514, 5IT9|1|2|U|1515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT9_075 not in the Motif Atlas

Homologous match to IL_4V88_460

Geometric discrepancy: 0.4028

The information below is about IL_4V88_460

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_77092.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5IT9|1|2|G|1486
5IT9|1|2|U|1487
5IT9|1|2|A|1488
5IT9|1|2|C|1489
5IT9|1|2|A|1490
5IT9|1|2|A|1491
5IT9|1|2|C|1492
*
5IT9|1|2|G|1511
5IT9|1|2|U|1512
5IT9|1|2|A|1513
5IT9|1|2|A|1514
5IT9|1|2|U|1515
5IT9|1|2|C|1516

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Ribosomal protein uS3

Chain T

Ribosomal protein eS19

Chain U

Ribosomal protein uS10

Chain d

Ribosomal protein eS29