IL_5IT9_076

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUGG*UCUGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT9_076 not in the Motif Atlas

Geometric match to IL_5J7L_056

Geometric discrepancy: 0.329

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5IT9|1|2|C|1493
5IT9|1|2|U|1494
5IT9|1|2|U|1495
5IT9|1|2|G|1496
5IT9|1|2|G|1497
*
5IT9|1|2|U|1506
5IT9|1|2|C|1507
5IT9|1|2|U|1508
5IT9|1|2|G|1509
5IT9|1|2|G|1510

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

Ribosomal protein uS19

Chain T

Ribosomal protein eS19