IL_5IT9_077

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT9_077 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.1469

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5IT9|1|2|G|1538
5IT9|1|2|G|1539
5IT9|1|2|G|1540
5IT9|1|2|A|1541
5IT9|1|2|U|1542
5IT9|1|2|A|1543
*
5IT9|1|2|U|1564
5IT9|1|2|U|1565
5IT9|1|2|C|1566
5IT9|1|2|A|1567
5IT9|1|2|A|1568
5IT9|1|2|C|1569

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

Ribosomal protein uS13

Chain T

Ribosomal protein eS19