IL_5IT9_090

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07623.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

5IT9|1|i|C|6127
5IT9|1|i|A|6128
5IT9|1|i|G|6129
*
5IT9|1|i|C|6157
5IT9|1|i|A|6158
5IT9|1|i|G|6159

Current chains

Chain i

Cricket paralysis virus IRES RNA

Nearby chains